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301
3dslicer_endtoend_301
Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, draw a circula...
Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_Ne...
{ "id": "3dslicer_endtoend_301", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert graysc...
19
19
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/...
/home/rishu/Projects/3D slicer/MRI Brain
302
3dslicer_endtoend_302
Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, add annotation label to highlight ROI...
Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_46_SaveScene_Dialog.png → BMRI_24_Model_3DView_Sur...
{ "id": "3dslicer_endtoend_302", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogr...
16
16
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MR...
/home/rishu/Projects/3D slicer/MRI Brain
303
3dslicer_endtoend_303
Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, place two fiduc...
Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_26_Selec...
{ "id": "3dslicer_endtoend_303", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr...
17
17
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/...
/home/rishu/Projects/3D slicer/MRI Brain
304
3dslicer_endtoend_304
Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, add annotation label to highligh...
Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_S...
{ "id": "3dslicer_endtoend_304", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i...
16
16
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/...
/home/rishu/Projects/3D slicer/MRI Brain
305
3dslicer_endtoend_305
Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, draw a circular ROI over the l...
Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Mod...
{ "id": "3dslicer_endtoend_305", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert graysc...
18
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/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/...
/home/rishu/Projects/3D slicer/MRI Brain
306
3dslicer_endtoend_306
Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and...
Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BM...
{ "id": "3dslicer_endtoend_306", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr...
19
19
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/...
/home/rishu/Projects/3D slicer/MRI Brain
307
3dslicer_endtoend_307
Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, compute ROI statistic...
Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Mode...
{ "id": "3dslicer_endtoend_307", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i...
20
20
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/M...
/home/rishu/Projects/3D slicer/MRI Brain
308
3dslicer_endtoend_308
Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, normalize intensity levels across slices, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and...
Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible....
{ "id": "3dslicer_endtoend_308", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias co...
19
19
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/...
/home/rishu/Projects/3D slicer/MRI Brain
309
3dslicer_endtoend_309
Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard de...
Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → ...
{ "id": "3dslicer_endtoend_309", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n...
18
18
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer...
/home/rishu/Projects/3D slicer/MRI Brain
310
3dslicer_endtoend_310
Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectangular R...
Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_...
{ "id": "3dslicer_endtoend_310", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr...
16
16
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/...
/home/rishu/Projects/3D slicer/MRI Brain
311
3dslicer_endtoend_311
Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, draw a circular ROI over the ...
Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisib...
{ "id": "3dslicer_endtoend_311", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias co...
18
18
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/...
/home/rishu/Projects/3D slicer/MRI Brain
312
3dslicer_endtoend_312
Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, pl...
Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_...
{ "id": "3dslicer_endtoend_312", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a...
19
19
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/M...
/home/rishu/Projects/3D slicer/MRI Brain
313
3dslicer_endtoend_313
Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean ...
Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Stati...
{ "id": "3dslicer_endtoend_313", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i...
18
18
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Project...
/home/rishu/Projects/3D slicer/MRI Brain
314
3dslicer_endtoend_314
Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, draw a circular R...
Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_Surfac...
{ "id": "3dslicer_endtoend_314", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussia...
18
18
/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/...
/home/rishu/Projects/3D slicer/MRI Brain
315
3dslicer_endtoend_315
Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, place two fid...
Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png →...
{ "id": "3dslicer_endtoend_315", "initial_state": { "application": "3D Slicer", "display_resolution": [ 1920, 1080 ], "loaded_image": "Import_Shaurya_Data.png" }, "instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert gray...
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/home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/...
/home/rishu/Projects/3D slicer/MRI Brain