def stats(args):
logger.info("<STR_LIT>")<EOL>data = parse_ma_file(args.ma)<EOL>logger.info("<STR_LIT>")<EOL>is_align = _read_sam(args.sam)<EOL>is_json, is_db = _read_json(args.json)<EOL>res = _summarise_sam(data, is_align, is_json, is_db)<EOL>_write_suma(res, os.path.join(args.out, "<STR_LIT>"))<EOL>logger.info("<STR_LIT>")<EOL>
Create stats from the analysis