def _order_antisense_column(cov_file, min_reads):
new_cov = op.join(op.dirname(cov_file), '<STR_LIT>')<EOL>with open(cov_file) as in_handle:<EOL><INDENT>with open(new_cov, '<STR_LIT:w>') as out_handle:<EOL><INDENT>print("<STR_LIT>", file=out_handle, end="<STR_LIT>")<EOL>for line in in_handle:<EOL><INDENT>cols = line.strip().split("<STR_LIT:\t>")<EOL>cols[<NUM_LIT:6>] = <NUM_LIT:0> if cols[<NUM_LIT:6>] < min_reads else cols[<NUM_LIT:6>]<EOL>print("<STR_LIT>" % (cols[<NUM_LIT:3>], cols[<NUM_LIT:6>]), file=out_handle, end="<STR_LIT>")<EOL><DEDENT><DEDENT><DEDENT>return new_cov<EOL>
Move counts to score columns in bed file