def __init__(self, chrom, genomic_start, genomic_end, consensus_match_strand,<EOL>consensus_start, consensus_end, consensus_len, retrotransposon,<EOL>pairwise_alignment=None, uniq_id=None):
GenomicInterval.__init__(self, chrom, genomic_start, genomic_end,<EOL>retrotransposon.name, <NUM_LIT:0>, "<STR_LIT:+>")<EOL>self.consensus_start = consensus_start<EOL>self.consensus_end = consensus_end<EOL>self.consensus_len = consensus_len<EOL>self.consensus_match_strand = consensus_match_strand<EOL>self.retrotransposon = retrotransposon<EOL>self.uniq_id = uniq_id<EOL>self.pairwise_alignment = pairwise_alignment<EOL>
Constructor for RetrotransposonOccurrence objects; see class docstring
for parameter defs.