def convert2phylip(convert):
out = '<STR_LIT>' % (convert.rsplit('<STR_LIT:.>', <NUM_LIT:1>)[<NUM_LIT:0>])<EOL>if check(out) is False:<EOL><INDENT>convert = open(convert, '<STR_LIT>')<EOL>out_f = open(out, '<STR_LIT:w>')<EOL>alignments = AlignIO.parse(convert, "<STR_LIT>")<EOL>AlignIO.write(alignments, out, "<STR_LIT>")<EOL><DEDENT>return out<EOL>
convert fasta to phylip because RAxML is ridiculous