def predictions(args):
logger.info(args)<EOL>logger.info("<STR_LIT>")<EOL>out_file = os.path.abspath(os.path.splitext(args.json)[<NUM_LIT:0>] + "<STR_LIT>")<EOL>data = load_data(args.json)<EOL>out_dir = os.path.abspath(safe_dirs(os.path.join(args.out, "<STR_LIT>")))<EOL>logger.info("<STR_LIT>")<EOL>data = is_tRNA(data, out_dir, args)<EOL>if args.coral:<EOL><INDENT>logger.info("<STR_LIT>")<EOL>run_coral(data, out_dir, args)<EOL><DEDENT>write_data(data[<NUM_LIT:0>], out_file)<EOL>logger.info("<STR_LIT>")<EOL>
Create predictions of clusters