def filter_rep_set(inF, otuSet):
seqs = []<EOL>for record in SeqIO.parse(inF, "<STR_LIT>"):<EOL><INDENT>if record.id in otuSet:<EOL><INDENT>seqs.append(record)<EOL><DEDENT><DEDENT>return seqs<EOL>
Parse the rep set file and remove all sequences not associated with unique
OTUs.

:@type inF: file
:@param inF: The representative sequence set

:@rtype: list
:@return: The set of sequences associated with unique OTUs