

"""simple docstring"""





import math




def   _A  (  UpperCamelCase_     :       int)	->						bool:
   '''simple docstring'''


   assert isinstance(UpperCamelCase_,			UpperCamelCase_) and (
       number >= 0
   ), "'number' must been an int and positive"

   if 1 < number < 4:
      # 2 and 3 are primes
      return True
   elif number < 2 or not number % 2:
      # Negatives, 0, 1 and all even numbers are not primes
      return False

   __lowercase								=						range(3,			int(math.sqrt(UpperCamelCase_) + 1),			2)
   return not any(not number % i for i in odd_numbers)




def   _A  (  UpperCamelCase_     :       Optional[Any],			UpperCamelCase_     :       int=1,			**UpperCamelCase_     :       Optional[Any])	->						Tuple:
   '''simple docstring'''


   __lowercase								=						factor * value
   __lowercase								=						value

   while not is_prime(UpperCamelCase_):
      value += 1 if not ("desc" in kwargs and kwargs["desc"] is True) else -1

   if value == first_value_val:
      return next_prime(value + 1,			**UpperCamelCase_)
   return value







"""simple docstring"""





import argparse
import json
import os
import re
import shutil

import torch

from transformers import BioGptConfig, BioGptForCausalLM
from transformers.models.biogpt.tokenization_biogpt import VOCAB_FILES_NAMES
from transformers.tokenization_utils_base import TOKENIZER_CONFIG_FILE
from transformers.utils import WEIGHTS_NAME, logging


logging.set_verbosity_warning()

_a       =							2




class 					_lowerCAmelCase  :







 """simple docstring"""







 def __init__(			self							:			Dict,					*,  # begin keyword-only arguments
     UpperCAmelCase__							:			str="<s>",					UpperCAmelCase__							:			Tuple="<pad>",					UpperCAmelCase__							:			str="</s>",					UpperCAmelCase__							:			Optional[Any]="<unk>",					UpperCAmelCase__							:			List[Any]=None,					):
    __lowercase		,__lowercase		,__lowercase		,__lowercase								=						bos, unk, pad, eos
    __lowercase								=						[]
    __lowercase								=						[]
    __lowercase								=						{}
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    if extra_special_symbols:
       for s in extra_special_symbols:
          self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						len(self.symbols	)


 def __eq__(			self							:			List[str],					UpperCAmelCase__							:			Dict	):
    return self.indices == other.indices


 def __getitem__(			self							:			Optional[int],					UpperCAmelCase__							:			List[str]	):
    if idx < len(self.symbols	):
       return self.symbols[idx]
    return self.unk_word


 def __len__(			self							:			str	):
    return len(self.symbols	)


 def __contains__(			self							:			Any,					UpperCAmelCase__							:			Optional[Any]	):
    return sym in self.indices


 @classmethod
 def 					_lowercase (			cls							:			List[Any],					UpperCAmelCase__							:			Optional[Any]	):
    __lowercase								=						cls()
    d.add_from_file(UpperCAmelCase__	)
    return d


 def 					_lowercase (			self							:			Dict,					UpperCAmelCase__							:			Optional[Any],					UpperCAmelCase__							:			List[Any]=1,					UpperCAmelCase__							:			str=False	):
    if word in self.indices and not overwrite:
       __lowercase								=						self.indices[word]
       __lowercase								=						self.count[idx] + n
       return idx
    else:
       __lowercase								=						len(self.symbols	)
       __lowercase								=						idx
       self.symbols.append(UpperCAmelCase__	)
       self.count.append(UpperCAmelCase__	)
       return idx


 def 					_lowercase (			self							:			Any,					UpperCAmelCase__							:			str	):
    return 0



 def 					_lowercase (			self							:			Tuple,					UpperCAmelCase__							:			List[Any]	):
    if isinstance(UpperCAmelCase__,					UpperCAmelCase__	):
       try:
          with open(UpperCAmelCase__,					"r",					encoding="utf-8"	) as fd:
             self.add_from_file(UpperCAmelCase__	)
       except FileNotFoundError as fnfe:
          raise fnfe
       except UnicodeError:
          raise Exception("Incorrect encoding detected in {}, please rebuild the dataset".format(UpperCAmelCase__	)	)
       return

    __lowercase								=						f.readlines()
    __lowercase								=						self._load_meta(UpperCAmelCase__	)

    for line in lines[indices_start_line:]:
       try:
          __lowercase		,__lowercase								=						line.rstrip().rsplit(" ",					1	)
          if field == "#fairseq:overwrite":
             __lowercase								=						True
             __lowercase		,__lowercase								=						line.rsplit(" ",					1	)
          else:
             __lowercase								=						False
          __lowercase								=						int(UpperCAmelCase__	)
          __lowercase								=						line
          if word in self and not overwrite:
             raise RuntimeError(
                 "Duplicate word found when loading Dictionary: '{}'. "
                 "Duplicate words can overwrite earlier ones by adding the "
                 "#fairseq:overwrite flag at the end of the corresponding row "
                 "in the dictionary file. If using the Camembert model, please "
                 "download an updated copy of the model file.".format(UpperCAmelCase__	)	)
          self.add_symbol(UpperCAmelCase__,					n=UpperCAmelCase__,					overwrite=UpperCAmelCase__	)
       except ValueError:
          raise ValueError("Incorrect dictionary format, expected '<token> <cnt> [flags]'"	)







def   _A  (  UpperCamelCase_     :       int)	->						str:
   '''simple docstring'''


   __lowercase								=						dict((re.sub(r"@@$",			"",			UpperCamelCase_), v) if k.endswith("@@") else (re.sub(r"$",			"</w>",			UpperCamelCase_), v) for k, v in d.items())
   __lowercase								=						"<s> <pad> </s> <unk>".split()
   # restore the special tokens
   for k in keep_keys:
      del da[F"""{k}</w>"""]
      __lowercase								=						d[k]  # restore
   return da




def   _A  (  UpperCamelCase_     :       str,			UpperCamelCase_     :       str)	->						List[Any]:
   '''simple docstring'''


   if not os.path.exists(UpperCamelCase_):
      raise ValueError(F"""path {biogpt_checkpoint_path} does not exist!""")
   os.makedirs(UpperCamelCase_,			exist_ok=UpperCamelCase_)
   print(F"""Writing results to {pytorch_dump_folder_path}""")

   # handle various types of models

   __lowercase								=						os.path.join(UpperCamelCase_,			"checkpoint.pt")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {checkpoint_file} does not exist!""")
   __lowercase								=						torch.load(UpperCamelCase_,			map_location="cpu")

   __lowercase								=						chkpt["cfg"]["model"]

   # dicts
   __lowercase								=						os.path.join(UpperCamelCase_,			"dict.txt")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {dict_file} does not exist!""")
   __lowercase								=						Dictionary.load(UpperCamelCase_)
   __lowercase								=						rewrite_dict_keys(src_dict.indices)
   __lowercase								=						len(UpperCamelCase_)
   __lowercase								=						os.path.join(UpperCamelCase_,			VOCAB_FILES_NAMES["vocab_file"])
   print(F"""Generating {src_vocab_file} of {src_vocab_size} records""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # merges_file (bpecodes)
   __lowercase								=						os.path.join(UpperCamelCase_,			"bpecodes")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {bpecodes_file} does not exist!""")

   __lowercase								=						os.path.join(UpperCamelCase_,			VOCAB_FILES_NAMES["merges_file"])
   shutil.copyfile(UpperCamelCase_,			UpperCamelCase_)

   # model config
   __lowercase								=						os.path.join(UpperCamelCase_,			"config.json")

   __lowercase								=						{
       "activation_dropout": args["activation_dropout"],
       "architectures": ["BioGptForCausalLM"],
       "attention_probs_dropout_prob": args["attention_dropout"],
       "bos_token_id": 0,
       "eos_token_id": 2,
       "hidden_act": args["activation_fn"],
       "hidden_dropout_prob": args["dropout"],
       "hidden_size": args["decoder_embed_dim"],
       "initializer_range": 0.02,
       "intermediate_size": args["decoder_ffn_embed_dim"],
       "layer_norm_eps": 1E-12,
       "layerdrop": args["decoder_layerdrop"],
       "max_position_embeddings": args["max_target_positions"],
       "model_type": "biogpt",
       "num_attention_heads": args["decoder_attention_heads"],
       "num_hidden_layers": args["decoder_layers"],
       "pad_token_id": 1,
       "scale_embedding": not args["no_scale_embedding"],
       "tie_word_embeddings": args["share_decoder_input_output_embed"],
       "vocab_size": src_vocab_size,
   }

   # good hparam defaults to start with

   print(F"""Generating {biogpt_model_config_file}""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # tokenizer config
   __lowercase								=						os.path.join(UpperCamelCase_,			UpperCamelCase_)

   __lowercase								=						{
       "bos_token": "<s>",
       "eos_token": "</s>",
       "model_max_length": 1024,
       "pad_token": "<pad>",
       "special_tokens_map_file": None,
       "tokenizer_class": "BioGptTokenizer",
       "unk_token": "<unk>",
   }

   print(F"""Generating {biogpt_tokenizer_config_file}""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # model
   __lowercase								=						chkpt["model"]

   # remove unneeded keys
   __lowercase								=						[
       "decoder.version",
   ]
   for k in ignore_keys:
      model_state_dict.pop(UpperCamelCase_,			UpperCamelCase_)

   __lowercase								=						list(model_state_dict.keys())
   for layer_name in layer_names:
      if layer_name.endswith("output_projection.weight"):
         __lowercase								=						model_state_dict.pop(UpperCamelCase_)
      else:
         __lowercase								=						model_state_dict.pop(UpperCamelCase_)

   __lowercase								=						BioGptConfig.from_pretrained(UpperCamelCase_)
   __lowercase								=						BioGptForCausalLM(UpperCamelCase_)

   # check that it loads ok
   model_new.load_state_dict(UpperCamelCase_)

   # save
   __lowercase								=						os.path.join(UpperCamelCase_,			UpperCamelCase_)
   print(F"""Generating {pytorch_weights_dump_path}""")
   torch.save(UpperCamelCase_,			UpperCamelCase_)

   print("Conversion is done!")


if __name__ == "__main__":
   _a       =							argparse.ArgumentParser()
   # Required parameters
   parser.add_argument(
       '--biogpt_checkpoint_path',
       default=None,
       type=str,
       required=True,
       help=(
           'Path to the official PyTorch checkpoint file which is expected to reside in the dump dir with dicts,'
           ' bpecodes, etc.'
       ),
   )
   parser.add_argument(
       '--pytorch_dump_folder_path', default=None, type=str, required=True, help='Path to the output PyTorch model.'
   )
   _a       =							parser.parse_args()
   convert_biogpt_checkpoint_to_pytorch(args.biogpt_checkpoint_path, args.pytorch_dump_folder_path)




