

"""simple docstring"""





import inspect
import unittest

import numpy as np

from transformers import BeitConfig
from transformers.testing_utils import require_flax, require_vision, slow
from transformers.utils import cached_property, is_flax_available, is_vision_available

from ...test_configuration_common import ConfigTester
from ...test_modeling_flax_common import FlaxModelTesterMixin, floats_tensor, ids_tensor


if is_flax_available():
   import jax

   from transformers import FlaxBeitForImageClassification, FlaxBeitForMaskedImageModeling, FlaxBeitModel

if is_vision_available():
   from PIL import Image

   from transformers import BeitImageProcessor




class 					_lowerCAmelCase  (	unittest.TestCase   ):







 """simple docstring"""







 def __init__(			self							:			str,					UpperCAmelCase__							:			List[Any],					UpperCAmelCase__							:			int=1_0_0,					UpperCAmelCase__							:			Any=1_3,					UpperCAmelCase__							:			List[Any]=3_0,					UpperCAmelCase__							:			Dict=2,					UpperCAmelCase__							:			Any=3,					UpperCAmelCase__							:			Optional[Any]=True,					UpperCAmelCase__							:			List[str]=True,					UpperCAmelCase__							:			Optional[Any]=3_2,					UpperCAmelCase__							:			Any=5,					UpperCAmelCase__							:			Any=4,					UpperCAmelCase__							:			Any=3_7,					UpperCAmelCase__							:			Optional[int]="gelu",					UpperCAmelCase__							:			Dict=0.1,					UpperCAmelCase__							:			Optional[int]=0.1,					UpperCAmelCase__							:			Dict=1_0,					UpperCAmelCase__							:			Tuple=0.02,					UpperCAmelCase__							:			List[Any]=3,					):
    __lowercase								=						parent
    __lowercase								=						vocab_size
    __lowercase								=						batch_size
    __lowercase								=						image_size
    __lowercase								=						patch_size
    __lowercase								=						num_channels
    __lowercase								=						is_training
    __lowercase								=						use_labels
    __lowercase								=						hidden_size
    __lowercase								=						num_hidden_layers
    __lowercase								=						num_attention_heads
    __lowercase								=						intermediate_size
    __lowercase								=						hidden_act
    __lowercase								=						hidden_dropout_prob
    __lowercase								=						attention_probs_dropout_prob
    __lowercase								=						type_sequence_label_size
    __lowercase								=						initializer_range

    # in BeiT, the seq length equals the number of patches + 1 (we add 1 for the [CLS] token)
    __lowercase								=						(image_size // patch_size) ** 2
    __lowercase								=						num_patches + 1


 def 					_lowercase (			self							:			int	):
    __lowercase								=						floats_tensor([self.batch_size, self.num_channels, self.image_size, self.image_size]	)

    __lowercase								=						None
    if self.use_labels:
       __lowercase								=						ids_tensor([self.batch_size],					self.type_sequence_label_size	)

    __lowercase								=						BeitConfig(
        vocab_size=self.vocab_size,					image_size=self.image_size,					patch_size=self.patch_size,					num_channels=self.num_channels,					hidden_size=self.hidden_size,					num_hidden_layers=self.num_hidden_layers,					num_attention_heads=self.num_attention_heads,					intermediate_size=self.intermediate_size,					hidden_act=self.hidden_act,					hidden_dropout_prob=self.hidden_dropout_prob,					attention_probs_dropout_prob=self.attention_probs_dropout_prob,					is_decoder=UpperCAmelCase__,					initializer_range=self.initializer_range,					)

    return config, pixel_values, labels


 def 					_lowercase (			self							:			Any,					UpperCAmelCase__							:			List[Any],					UpperCAmelCase__							:			List[str],					UpperCAmelCase__							:			List[str]	):
    __lowercase								=						FlaxBeitModel(config=UpperCAmelCase__	)
    __lowercase								=						model(UpperCAmelCase__	)
    self.parent.assertEqual(result.last_hidden_state.shape,					(self.batch_size, self.seq_length, self.hidden_size)	)


 def 					_lowercase (			self							:			Optional[Any],					UpperCAmelCase__							:			Optional[Any],					UpperCAmelCase__							:			int,					UpperCAmelCase__							:			List[Any]	):
    __lowercase								=						FlaxBeitForMaskedImageModeling(config=UpperCAmelCase__	)
    __lowercase								=						model(UpperCAmelCase__	)
    self.parent.assertEqual(result.logits.shape,					(self.batch_size, self.seq_length - 1, self.vocab_size)	)


 def 					_lowercase (			self							:			Dict,					UpperCAmelCase__							:			List[Any],					UpperCAmelCase__							:			Any,					UpperCAmelCase__							:			Union[str, Any]	):
    __lowercase								=						self.type_sequence_label_size
    __lowercase								=						FlaxBeitForImageClassification(config=UpperCAmelCase__	)
    __lowercase								=						model(UpperCAmelCase__	)
    self.parent.assertEqual(result.logits.shape,					(self.batch_size, self.type_sequence_label_size)	)

    # test greyscale images
    __lowercase								=						1
    __lowercase								=						FlaxBeitForImageClassification(UpperCAmelCase__	)

    __lowercase								=						floats_tensor([self.batch_size, 1, self.image_size, self.image_size]	)
    __lowercase								=						model(UpperCAmelCase__	)



 def 					_lowercase (			self							:			List[str]	):
    __lowercase								=						self.prepare_config_and_inputs()
    (
        (
        __lowercase
    )		,(
        __lowercase
    )		,(
        __lowercase
    )		,
    )								=						config_and_inputs
    __lowercase								=						{"pixel_values": pixel_values}
    return config, inputs_dict







@require_flax
class 					_lowerCAmelCase  (	lowercase     ,unittest.TestCase   ):







 """simple docstring"""







 __UpperCAmelCase	:					str   		=	(
     (FlaxBeitModel, FlaxBeitForImageClassification, FlaxBeitForMaskedImageModeling) if is_flax_available() else ()
 )


 def 					_lowercase (			self							:			List[Any]	):
    __lowercase								=						FlaxBeitModelTester(self	)
    __lowercase								=						ConfigTester(self,					config_class=UpperCAmelCase__,					has_text_modality=UpperCAmelCase__,					hidden_size=3_7	)


 def 					_lowercase (			self							:			Union[str, Any]	):
    self.config_tester.run_common_tests()


 def 					_lowercase (			self							:			Optional[int]	):
    __lowercase		,__lowercase								=						self.model_tester.prepare_config_and_inputs_for_common()

    for model_class in self.all_model_classes:
       __lowercase								=						model_class(UpperCAmelCase__	)
       __lowercase								=						inspect.signature(model.__call__	)
       # signature.parameters is an OrderedDict => so arg_names order is deterministic
       __lowercase								=						[*signature.parameters.keys()]

       __lowercase								=						["pixel_values"]
       self.assertListEqual(arg_names[:1],					UpperCAmelCase__	)


 def 					_lowercase (			self							:			Tuple	):
    __lowercase		,__lowercase								=						self.model_tester.prepare_config_and_inputs_for_common()

    for model_class in self.all_model_classes:
       with self.subTest(model_class.__name__	):
          __lowercase								=						self._prepare_for_class(UpperCAmelCase__,					UpperCAmelCase__	)
          __lowercase								=						model_class(UpperCAmelCase__	)

          @jax.jit
          def model_jitted(UpperCAmelCase__							:			str,					**UpperCAmelCase__							:			Dict	):
             return model(pixel_values=UpperCAmelCase__,					**UpperCAmelCase__	)

          with self.subTest("JIT Enabled"	):
             __lowercase								=						model_jitted(**UpperCAmelCase__	).to_tuple()

          with self.subTest("JIT Disabled"	):
             with jax.disable_jit():
                __lowercase								=						model_jitted(**UpperCAmelCase__	).to_tuple()

          self.assertEqual(len(UpperCAmelCase__	),					len(UpperCAmelCase__	)	)
          for jitted_output, output in zip(UpperCAmelCase__,					UpperCAmelCase__	):
             self.assertEqual(jitted_output.shape,					output.shape	)


 def 					_lowercase (			self							:			List[str]	):
    __lowercase								=						self.model_tester.prepare_config_and_inputs()
    self.model_tester.create_and_check_model(*UpperCAmelCase__	)


 def 					_lowercase (			self							:			int	):
    __lowercase								=						self.model_tester.prepare_config_and_inputs()
    self.model_tester.create_and_check_for_masked_lm(*UpperCAmelCase__	)


 def 					_lowercase (			self							:			Tuple	):
    __lowercase								=						self.model_tester.prepare_config_and_inputs()
    self.model_tester.create_and_check_for_image_classification(*UpperCAmelCase__	)



 @slow
 def 					_lowercase (			self							:			Union[str, Any]	):
    for model_class_name in self.all_model_classes:
       __lowercase								=						model_class_name.from_pretrained("microsoft/beit-base-patch16-224"	)
       __lowercase								=						model(np.ones((1, 3, 2_2_4, 2_2_4)	)	)
       self.assertIsNotNone(UpperCAmelCase__	)







def   _A  (  )	->						str:
   '''simple docstring'''


   __lowercase								=						Image.open("./tests/fixtures/tests_samples/COCO/000000039769.png")
   return image




@require_vision
@require_flax
class 					_lowerCAmelCase  (	unittest.TestCase   ):







 """simple docstring"""







 @cached_property
 def 					_lowercase (			self							:			Optional[int]	):
    return BeitImageProcessor.from_pretrained("microsoft/beit-base-patch16-224"	) if is_vision_available() else None


 @slow
 def 					_lowercase (			self							:			Any	):
    __lowercase								=						FlaxBeitForMaskedImageModeling.from_pretrained("microsoft/beit-base-patch16-224-pt22k"	)

    __lowercase								=						self.default_image_processor
    __lowercase								=						prepare_img()
    __lowercase								=						image_processor(images=UpperCAmelCase__,					return_tensors="np"	).pixel_values

    # prepare bool_masked_pos
    __lowercase								=						np.ones((1, 1_9_6),					dtype=UpperCAmelCase__	)

    # forward pass
    __lowercase								=						model(pixel_values=UpperCAmelCase__,					bool_masked_pos=UpperCAmelCase__	)
    __lowercase								=						outputs.logits

    # verify the logits
    __lowercase								=						(1, 1_9_6, 8_1_9_2)
    self.assertEqual(logits.shape,					UpperCAmelCase__	)

    __lowercase								=						np.array(
        [[-3.2_437, 0.5_072, -13.9_174], [-3.2_456, 0.4_948, -13.9_401], [-3.2_033, 0.5_121, -13.8_550]]	)

    self.assertTrue(np.allclose(logits[bool_masked_pos][:3, :3],					UpperCAmelCase__,					atol=1E-2	)	)


 @slow
 def 					_lowercase (			self							:			Any	):
    __lowercase								=						FlaxBeitForImageClassification.from_pretrained("microsoft/beit-base-patch16-224"	)

    __lowercase								=						self.default_image_processor
    __lowercase								=						prepare_img()
    __lowercase								=						image_processor(images=UpperCAmelCase__,					return_tensors="np"	)

    # forward pass
    __lowercase								=						model(**UpperCAmelCase__	)
    __lowercase								=						outputs.logits

    # verify the logits
    __lowercase								=						(1, 1_0_0_0)
    self.assertEqual(logits.shape,					UpperCAmelCase__	)

    __lowercase								=						np.array([-1.2_385, -1.0_987, -1.0_108]	)

    self.assertTrue(np.allclose(logits[0, :3],					UpperCAmelCase__,					atol=1E-4	)	)

    __lowercase								=						2_8_1
    self.assertEqual(logits.argmax(-1	).item(),					UpperCAmelCase__	)



 @slow
 def 					_lowercase (			self							:			List[str]	):
    __lowercase								=						FlaxBeitForImageClassification.from_pretrained("microsoft/beit-large-patch16-224-pt22k-ft22k"	)

    __lowercase								=						self.default_image_processor
    __lowercase								=						prepare_img()
    __lowercase								=						image_processor(images=UpperCAmelCase__,					return_tensors="np"	)

    # forward pass
    __lowercase								=						model(**UpperCAmelCase__	)
    __lowercase								=						outputs.logits

    # verify the logits
    __lowercase								=						(1, 2_1_8_4_1)
    self.assertEqual(logits.shape,					UpperCAmelCase__	)

    __lowercase								=						np.array([1.6_881, -0.2_787, 0.5_901]	)

    self.assertTrue(np.allclose(logits[0, :3],					UpperCAmelCase__,					atol=1E-4	)	)

    __lowercase								=						2_3_9_6
    self.assertEqual(logits.argmax(-1	).item(),					UpperCAmelCase__	)







"""simple docstring"""





import argparse
import json
import os
import re
import shutil

import torch

from transformers import BioGptConfig, BioGptForCausalLM
from transformers.models.biogpt.tokenization_biogpt import VOCAB_FILES_NAMES
from transformers.tokenization_utils_base import TOKENIZER_CONFIG_FILE
from transformers.utils import WEIGHTS_NAME, logging


logging.set_verbosity_warning()

_a       =							2




class 					_lowerCAmelCase  :







 """simple docstring"""







 def __init__(			self							:			Dict,					*,  # begin keyword-only arguments
     UpperCAmelCase__							:			str="<s>",					UpperCAmelCase__							:			Tuple="<pad>",					UpperCAmelCase__							:			str="</s>",					UpperCAmelCase__							:			Optional[Any]="<unk>",					UpperCAmelCase__							:			List[Any]=None,					):
    __lowercase		,__lowercase		,__lowercase		,__lowercase								=						bos, unk, pad, eos
    __lowercase								=						[]
    __lowercase								=						[]
    __lowercase								=						{}
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    if extra_special_symbols:
       for s in extra_special_symbols:
          self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						len(self.symbols	)


 def __eq__(			self							:			List[str],					UpperCAmelCase__							:			Dict	):
    return self.indices == other.indices


 def __getitem__(			self							:			Optional[int],					UpperCAmelCase__							:			List[str]	):
    if idx < len(self.symbols	):
       return self.symbols[idx]
    return self.unk_word


 def __len__(			self							:			str	):
    return len(self.symbols	)


 def __contains__(			self							:			Any,					UpperCAmelCase__							:			Optional[Any]	):
    return sym in self.indices


 @classmethod
 def 					_lowercase (			cls							:			List[Any],					UpperCAmelCase__							:			Optional[Any]	):
    __lowercase								=						cls()
    d.add_from_file(UpperCAmelCase__	)
    return d


 def 					_lowercase (			self							:			Dict,					UpperCAmelCase__							:			Optional[Any],					UpperCAmelCase__							:			List[Any]=1,					UpperCAmelCase__							:			str=False	):
    if word in self.indices and not overwrite:
       __lowercase								=						self.indices[word]
       __lowercase								=						self.count[idx] + n
       return idx
    else:
       __lowercase								=						len(self.symbols	)
       __lowercase								=						idx
       self.symbols.append(UpperCAmelCase__	)
       self.count.append(UpperCAmelCase__	)
       return idx


 def 					_lowercase (			self							:			Any,					UpperCAmelCase__							:			str	):
    return 0



 def 					_lowercase (			self							:			Tuple,					UpperCAmelCase__							:			List[Any]	):
    if isinstance(UpperCAmelCase__,					UpperCAmelCase__	):
       try:
          with open(UpperCAmelCase__,					"r",					encoding="utf-8"	) as fd:
             self.add_from_file(UpperCAmelCase__	)
       except FileNotFoundError as fnfe:
          raise fnfe
       except UnicodeError:
          raise Exception("Incorrect encoding detected in {}, please rebuild the dataset".format(UpperCAmelCase__	)	)
       return

    __lowercase								=						f.readlines()
    __lowercase								=						self._load_meta(UpperCAmelCase__	)

    for line in lines[indices_start_line:]:
       try:
          __lowercase		,__lowercase								=						line.rstrip().rsplit(" ",					1	)
          if field == "#fairseq:overwrite":
             __lowercase								=						True
             __lowercase		,__lowercase								=						line.rsplit(" ",					1	)
          else:
             __lowercase								=						False
          __lowercase								=						int(UpperCAmelCase__	)
          __lowercase								=						line
          if word in self and not overwrite:
             raise RuntimeError(
                 "Duplicate word found when loading Dictionary: '{}'. "
                 "Duplicate words can overwrite earlier ones by adding the "
                 "#fairseq:overwrite flag at the end of the corresponding row "
                 "in the dictionary file. If using the Camembert model, please "
                 "download an updated copy of the model file.".format(UpperCAmelCase__	)	)
          self.add_symbol(UpperCAmelCase__,					n=UpperCAmelCase__,					overwrite=UpperCAmelCase__	)
       except ValueError:
          raise ValueError("Incorrect dictionary format, expected '<token> <cnt> [flags]'"	)







def   _A  (  UpperCamelCase_     :       int)	->						str:
   '''simple docstring'''


   __lowercase								=						dict((re.sub(r"@@$",			"",			UpperCamelCase_), v) if k.endswith("@@") else (re.sub(r"$",			"</w>",			UpperCamelCase_), v) for k, v in d.items())
   __lowercase								=						"<s> <pad> </s> <unk>".split()
   # restore the special tokens
   for k in keep_keys:
      del da[F"""{k}</w>"""]
      __lowercase								=						d[k]  # restore
   return da




def   _A  (  UpperCamelCase_     :       str,			UpperCamelCase_     :       str)	->						List[Any]:
   '''simple docstring'''


   if not os.path.exists(UpperCamelCase_):
      raise ValueError(F"""path {biogpt_checkpoint_path} does not exist!""")
   os.makedirs(UpperCamelCase_,			exist_ok=UpperCamelCase_)
   print(F"""Writing results to {pytorch_dump_folder_path}""")

   # handle various types of models

   __lowercase								=						os.path.join(UpperCamelCase_,			"checkpoint.pt")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {checkpoint_file} does not exist!""")
   __lowercase								=						torch.load(UpperCamelCase_,			map_location="cpu")

   __lowercase								=						chkpt["cfg"]["model"]

   # dicts
   __lowercase								=						os.path.join(UpperCamelCase_,			"dict.txt")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {dict_file} does not exist!""")
   __lowercase								=						Dictionary.load(UpperCamelCase_)
   __lowercase								=						rewrite_dict_keys(src_dict.indices)
   __lowercase								=						len(UpperCamelCase_)
   __lowercase								=						os.path.join(UpperCamelCase_,			VOCAB_FILES_NAMES["vocab_file"])
   print(F"""Generating {src_vocab_file} of {src_vocab_size} records""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # merges_file (bpecodes)
   __lowercase								=						os.path.join(UpperCamelCase_,			"bpecodes")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {bpecodes_file} does not exist!""")

   __lowercase								=						os.path.join(UpperCamelCase_,			VOCAB_FILES_NAMES["merges_file"])
   shutil.copyfile(UpperCamelCase_,			UpperCamelCase_)

   # model config
   __lowercase								=						os.path.join(UpperCamelCase_,			"config.json")

   __lowercase								=						{
       "activation_dropout": args["activation_dropout"],
       "architectures": ["BioGptForCausalLM"],
       "attention_probs_dropout_prob": args["attention_dropout"],
       "bos_token_id": 0,
       "eos_token_id": 2,
       "hidden_act": args["activation_fn"],
       "hidden_dropout_prob": args["dropout"],
       "hidden_size": args["decoder_embed_dim"],
       "initializer_range": 0.02,
       "intermediate_size": args["decoder_ffn_embed_dim"],
       "layer_norm_eps": 1E-12,
       "layerdrop": args["decoder_layerdrop"],
       "max_position_embeddings": args["max_target_positions"],
       "model_type": "biogpt",
       "num_attention_heads": args["decoder_attention_heads"],
       "num_hidden_layers": args["decoder_layers"],
       "pad_token_id": 1,
       "scale_embedding": not args["no_scale_embedding"],
       "tie_word_embeddings": args["share_decoder_input_output_embed"],
       "vocab_size": src_vocab_size,
   }

   # good hparam defaults to start with

   print(F"""Generating {biogpt_model_config_file}""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # tokenizer config
   __lowercase								=						os.path.join(UpperCamelCase_,			UpperCamelCase_)

   __lowercase								=						{
       "bos_token": "<s>",
       "eos_token": "</s>",
       "model_max_length": 1024,
       "pad_token": "<pad>",
       "special_tokens_map_file": None,
       "tokenizer_class": "BioGptTokenizer",
       "unk_token": "<unk>",
   }

   print(F"""Generating {biogpt_tokenizer_config_file}""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # model
   __lowercase								=						chkpt["model"]

   # remove unneeded keys
   __lowercase								=						[
       "decoder.version",
   ]
   for k in ignore_keys:
      model_state_dict.pop(UpperCamelCase_,			UpperCamelCase_)

   __lowercase								=						list(model_state_dict.keys())
   for layer_name in layer_names:
      if layer_name.endswith("output_projection.weight"):
         __lowercase								=						model_state_dict.pop(UpperCamelCase_)
      else:
         __lowercase								=						model_state_dict.pop(UpperCamelCase_)

   __lowercase								=						BioGptConfig.from_pretrained(UpperCamelCase_)
   __lowercase								=						BioGptForCausalLM(UpperCamelCase_)

   # check that it loads ok
   model_new.load_state_dict(UpperCamelCase_)

   # save
   __lowercase								=						os.path.join(UpperCamelCase_,			UpperCamelCase_)
   print(F"""Generating {pytorch_weights_dump_path}""")
   torch.save(UpperCamelCase_,			UpperCamelCase_)

   print("Conversion is done!")


if __name__ == "__main__":
   _a       =							argparse.ArgumentParser()
   # Required parameters
   parser.add_argument(
       '--biogpt_checkpoint_path',
       default=None,
       type=str,
       required=True,
       help=(
           'Path to the official PyTorch checkpoint file which is expected to reside in the dump dir with dicts,'
           ' bpecodes, etc.'
       ),
   )
   parser.add_argument(
       '--pytorch_dump_folder_path', default=None, type=str, required=True, help='Path to the output PyTorch model.'
   )
   _a       =							parser.parse_args()
   convert_biogpt_checkpoint_to_pytorch(args.biogpt_checkpoint_path, args.pytorch_dump_folder_path)




