



"""simple docstring"""
import unittest

import numpy as np

from transformers import BertConfig, is_flax_available
from transformers.testing_utils import require_flax, slow

from ...test_modeling_flax_common import FlaxModelTesterMixin, floats_tensor, ids_tensor, random_attention_mask


if is_flax_available():
						from transformers.models.bert.modeling_flax_bert import (
						    FlaxBertForMaskedLM,
						    FlaxBertForMultipleChoice,
						    FlaxBertForNextSentencePrediction,
						    FlaxBertForPreTraining,
						    FlaxBertForQuestionAnswering,
						    FlaxBertForSequenceClassification,
						    FlaxBertForTokenClassification,
						    FlaxBertModel,
						)
class 				lowerCamelCase  (			unittest.TestCase				):






					'''simple docstring'''





					def __init__(       self:							List[Any]						,     snake_case:							List[str]						,     snake_case:							Optional[Any]=13						,     snake_case:							List[str]=7						,     snake_case:							Dict=True						,     snake_case:							List[str]=True						,     snake_case:							Optional[int]=True						,     snake_case:							Any=True						,     snake_case:							Optional[Any]=99						,     snake_case:							Tuple=32						,     snake_case:							Tuple=5						,     snake_case:							Dict=4						,     snake_case:							Optional[Any]=37						,     snake_case:							Union[str, Any]="gelu"						,     snake_case:							Tuple=0.1						,     snake_case:							List[Any]=0.1						,     snake_case:							List[str]=512						,     snake_case:							Optional[int]=16						,     snake_case:							int=2						,     snake_case:							List[Any]=0.0_2						,     snake_case:							Union[str, Any]=4						,     )   ->	List[str]:
											snake_case_ :Dict						=			parent
											snake_case_ :Any						=			batch_size
											snake_case_ :Any						=			seq_length
											snake_case_ :List[str]						=			is_training
											snake_case_ :Optional[Any]						=			use_attention_mask
											snake_case_ :Dict						=			use_token_type_ids
											snake_case_ :Union[str, Any]						=			use_labels
											snake_case_ :str						=			vocab_size
											snake_case_ :int						=			hidden_size
											snake_case_ :List[str]						=			num_hidden_layers
											snake_case_ :Dict						=			num_attention_heads
											snake_case_ :Any						=			intermediate_size
											snake_case_ :Tuple						=			hidden_act
											snake_case_ :int						=			hidden_dropout_prob
											snake_case_ :Optional[Any]						=			attention_probs_dropout_prob
											snake_case_ :Any						=			max_position_embeddings
											snake_case_ :Union[str, Any]						=			type_vocab_size
											snake_case_ :Optional[int]						=			type_sequence_label_size
											snake_case_ :Union[str, Any]						=			initializer_range
											snake_case_ :Tuple						=			num_choices






					def    lowerCAmelCase_				(       self:							Tuple						)   ->	str:
											snake_case_ :Optional[Any]						=			ids_tensor([self.batch_size, self.seq_length]						,     self.vocab_size						)

											snake_case_ :Union[str, Any]						=			None
											if self.use_attention_mask:
																	snake_case_ :str						=			random_attention_mask([self.batch_size, self.seq_length]						)

											snake_case_ :Any						=			None
											if self.use_token_type_ids:
																	snake_case_ :List[str]						=			ids_tensor([self.batch_size, self.seq_length]						,     self.type_vocab_size						)

											snake_case_ :int						=			BertConfig(
											    vocab_size=self.vocab_size						,     hidden_size=self.hidden_size						,     num_hidden_layers=self.num_hidden_layers						,     num_attention_heads=self.num_attention_heads						,     intermediate_size=self.intermediate_size						,     hidden_act=self.hidden_act						,     hidden_dropout_prob=self.hidden_dropout_prob						,     attention_probs_dropout_prob=self.attention_probs_dropout_prob						,     max_position_embeddings=self.max_position_embeddings						,     type_vocab_size=self.type_vocab_size						,     is_decoder=snake_case						,     initializer_range=self.initializer_range						,     )

											return config, input_ids, token_type_ids, attention_mask






					def    lowerCAmelCase_				(       self:							Optional[int]						)   ->	int:
											snake_case_ :str						=			self.prepare_config_and_inputs()
											snake_case_,       snake_case_,       snake_case_,       snake_case_ :Optional[int]						=			config_and_inputs
											snake_case_ :Union[str, Any]						=			{"""input_ids""": input_ids, """token_type_ids""": token_type_ids, """attention_mask""": attention_mask}
											return config, inputs_dict






					def    lowerCAmelCase_				(       self:							Optional[Any]						)   ->	Any:
											snake_case_ :int						=			self.prepare_config_and_inputs()
											snake_case_,       snake_case_,       snake_case_,       snake_case_ :Dict						=			config_and_inputs

											snake_case_ :Union[str, Any]						=			True
											snake_case_ :Optional[int]						=			floats_tensor([self.batch_size, self.seq_length, self.hidden_size]						)
											snake_case_ :Tuple						=			ids_tensor([self.batch_size, self.seq_length]						,     vocab_size=2						)

											return (
											    config,
											    input_ids,
											    attention_mask,
											    encoder_hidden_states,
											    encoder_attention_mask,
											)

@require_flax
class 				lowerCamelCase  (			_lowerCAmelCase    ,						unittest.TestCase				):






					'''simple docstring'''





					_A		:			List[str]						=     True

					_A		:			Dict						=     (
					    (
					        FlaxBertModel,
					        FlaxBertForPreTraining,
					        FlaxBertForMaskedLM,
					        FlaxBertForMultipleChoice,
					        FlaxBertForQuestionAnswering,
					        FlaxBertForNextSentencePrediction,
					        FlaxBertForSequenceClassification,
					        FlaxBertForTokenClassification,
					        FlaxBertForQuestionAnswering,
					    )
					    if is_flax_available()
					    else ()
					)






					def    lowerCAmelCase_				(       self:							int						)   ->	List[str]:
											snake_case_ :Any						=			FlaxBertModelTester(self						)






					@slow
					def    lowerCAmelCase_				(       self:							List[str]						)   ->	Dict:
											# Only check this for base model, not necessary for all model classes.
											# This will also help speed-up tests.
											snake_case_ :Dict						=			FlaxBertModel.from_pretrained("""bert-base-cased"""						)
											snake_case_ :Dict						=			model(np.ones((1, 1)						)						)
											self.assertIsNotNone(snake_case						)



"""simple docstring"""





import argparse
import json
import os
import re
import shutil

import torch

from transformers import BioGptConfig, BioGptForCausalLM
from transformers.models.biogpt.tokenization_biogpt import VOCAB_FILES_NAMES
from transformers.tokenization_utils_base import TOKENIZER_CONFIG_FILE
from transformers.utils import WEIGHTS_NAME, logging


logging.set_verbosity_warning()

_a       =							2




class 					_lowerCAmelCase  :







 """simple docstring"""







 def __init__(			self							:			Dict,					*,  # begin keyword-only arguments
     UpperCAmelCase__							:			str="<s>",					UpperCAmelCase__							:			Tuple="<pad>",					UpperCAmelCase__							:			str="</s>",					UpperCAmelCase__							:			Optional[Any]="<unk>",					UpperCAmelCase__							:			List[Any]=None,					):
    __lowercase		,__lowercase		,__lowercase		,__lowercase								=						bos, unk, pad, eos
    __lowercase								=						[]
    __lowercase								=						[]
    __lowercase								=						{}
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						self.add_symbol(UpperCAmelCase__	)
    if extra_special_symbols:
       for s in extra_special_symbols:
          self.add_symbol(UpperCAmelCase__	)
    __lowercase								=						len(self.symbols	)


 def __eq__(			self							:			List[str],					UpperCAmelCase__							:			Dict	):
    return self.indices == other.indices


 def __getitem__(			self							:			Optional[int],					UpperCAmelCase__							:			List[str]	):
    if idx < len(self.symbols	):
       return self.symbols[idx]
    return self.unk_word


 def __len__(			self							:			str	):
    return len(self.symbols	)


 def __contains__(			self							:			Any,					UpperCAmelCase__							:			Optional[Any]	):
    return sym in self.indices


 @classmethod
 def 					_lowercase (			cls							:			List[Any],					UpperCAmelCase__							:			Optional[Any]	):
    __lowercase								=						cls()
    d.add_from_file(UpperCAmelCase__	)
    return d


 def 					_lowercase (			self							:			Dict,					UpperCAmelCase__							:			Optional[Any],					UpperCAmelCase__							:			List[Any]=1,					UpperCAmelCase__							:			str=False	):
    if word in self.indices and not overwrite:
       __lowercase								=						self.indices[word]
       __lowercase								=						self.count[idx] + n
       return idx
    else:
       __lowercase								=						len(self.symbols	)
       __lowercase								=						idx
       self.symbols.append(UpperCAmelCase__	)
       self.count.append(UpperCAmelCase__	)
       return idx


 def 					_lowercase (			self							:			Any,					UpperCAmelCase__							:			str	):
    return 0



 def 					_lowercase (			self							:			Tuple,					UpperCAmelCase__							:			List[Any]	):
    if isinstance(UpperCAmelCase__,					UpperCAmelCase__	):
       try:
          with open(UpperCAmelCase__,					"r",					encoding="utf-8"	) as fd:
             self.add_from_file(UpperCAmelCase__	)
       except FileNotFoundError as fnfe:
          raise fnfe
       except UnicodeError:
          raise Exception("Incorrect encoding detected in {}, please rebuild the dataset".format(UpperCAmelCase__	)	)
       return

    __lowercase								=						f.readlines()
    __lowercase								=						self._load_meta(UpperCAmelCase__	)

    for line in lines[indices_start_line:]:
       try:
          __lowercase		,__lowercase								=						line.rstrip().rsplit(" ",					1	)
          if field == "#fairseq:overwrite":
             __lowercase								=						True
             __lowercase		,__lowercase								=						line.rsplit(" ",					1	)
          else:
             __lowercase								=						False
          __lowercase								=						int(UpperCAmelCase__	)
          __lowercase								=						line
          if word in self and not overwrite:
             raise RuntimeError(
                 "Duplicate word found when loading Dictionary: '{}'. "
                 "Duplicate words can overwrite earlier ones by adding the "
                 "#fairseq:overwrite flag at the end of the corresponding row "
                 "in the dictionary file. If using the Camembert model, please "
                 "download an updated copy of the model file.".format(UpperCAmelCase__	)	)
          self.add_symbol(UpperCAmelCase__,					n=UpperCAmelCase__,					overwrite=UpperCAmelCase__	)
       except ValueError:
          raise ValueError("Incorrect dictionary format, expected '<token> <cnt> [flags]'"	)







def   _A  (  UpperCamelCase_     :       int)	->						str:
   '''simple docstring'''


   __lowercase								=						dict((re.sub(r"@@$",			"",			UpperCamelCase_), v) if k.endswith("@@") else (re.sub(r"$",			"</w>",			UpperCamelCase_), v) for k, v in d.items())
   __lowercase								=						"<s> <pad> </s> <unk>".split()
   # restore the special tokens
   for k in keep_keys:
      del da[F"""{k}</w>"""]
      __lowercase								=						d[k]  # restore
   return da




def   _A  (  UpperCamelCase_     :       str,			UpperCamelCase_     :       str)	->						List[Any]:
   '''simple docstring'''


   if not os.path.exists(UpperCamelCase_):
      raise ValueError(F"""path {biogpt_checkpoint_path} does not exist!""")
   os.makedirs(UpperCamelCase_,			exist_ok=UpperCamelCase_)
   print(F"""Writing results to {pytorch_dump_folder_path}""")

   # handle various types of models

   __lowercase								=						os.path.join(UpperCamelCase_,			"checkpoint.pt")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {checkpoint_file} does not exist!""")
   __lowercase								=						torch.load(UpperCamelCase_,			map_location="cpu")

   __lowercase								=						chkpt["cfg"]["model"]

   # dicts
   __lowercase								=						os.path.join(UpperCamelCase_,			"dict.txt")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {dict_file} does not exist!""")
   __lowercase								=						Dictionary.load(UpperCamelCase_)
   __lowercase								=						rewrite_dict_keys(src_dict.indices)
   __lowercase								=						len(UpperCamelCase_)
   __lowercase								=						os.path.join(UpperCamelCase_,			VOCAB_FILES_NAMES["vocab_file"])
   print(F"""Generating {src_vocab_file} of {src_vocab_size} records""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # merges_file (bpecodes)
   __lowercase								=						os.path.join(UpperCamelCase_,			"bpecodes")
   if not os.path.isfile(UpperCamelCase_):
      raise ValueError(F"""path to the file {bpecodes_file} does not exist!""")

   __lowercase								=						os.path.join(UpperCamelCase_,			VOCAB_FILES_NAMES["merges_file"])
   shutil.copyfile(UpperCamelCase_,			UpperCamelCase_)

   # model config
   __lowercase								=						os.path.join(UpperCamelCase_,			"config.json")

   __lowercase								=						{
       "activation_dropout": args["activation_dropout"],
       "architectures": ["BioGptForCausalLM"],
       "attention_probs_dropout_prob": args["attention_dropout"],
       "bos_token_id": 0,
       "eos_token_id": 2,
       "hidden_act": args["activation_fn"],
       "hidden_dropout_prob": args["dropout"],
       "hidden_size": args["decoder_embed_dim"],
       "initializer_range": 0.02,
       "intermediate_size": args["decoder_ffn_embed_dim"],
       "layer_norm_eps": 1E-12,
       "layerdrop": args["decoder_layerdrop"],
       "max_position_embeddings": args["max_target_positions"],
       "model_type": "biogpt",
       "num_attention_heads": args["decoder_attention_heads"],
       "num_hidden_layers": args["decoder_layers"],
       "pad_token_id": 1,
       "scale_embedding": not args["no_scale_embedding"],
       "tie_word_embeddings": args["share_decoder_input_output_embed"],
       "vocab_size": src_vocab_size,
   }

   # good hparam defaults to start with

   print(F"""Generating {biogpt_model_config_file}""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # tokenizer config
   __lowercase								=						os.path.join(UpperCamelCase_,			UpperCamelCase_)

   __lowercase								=						{
       "bos_token": "<s>",
       "eos_token": "</s>",
       "model_max_length": 1024,
       "pad_token": "<pad>",
       "special_tokens_map_file": None,
       "tokenizer_class": "BioGptTokenizer",
       "unk_token": "<unk>",
   }

   print(F"""Generating {biogpt_tokenizer_config_file}""")
   with open(UpperCamelCase_,			"w",			encoding="utf-8") as f:
      f.write(json.dumps(UpperCamelCase_,			ensure_ascii=UpperCamelCase_,			indent=UpperCamelCase_))

   # model
   __lowercase								=						chkpt["model"]

   # remove unneeded keys
   __lowercase								=						[
       "decoder.version",
   ]
   for k in ignore_keys:
      model_state_dict.pop(UpperCamelCase_,			UpperCamelCase_)

   __lowercase								=						list(model_state_dict.keys())
   for layer_name in layer_names:
      if layer_name.endswith("output_projection.weight"):
         __lowercase								=						model_state_dict.pop(UpperCamelCase_)
      else:
         __lowercase								=						model_state_dict.pop(UpperCamelCase_)

   __lowercase								=						BioGptConfig.from_pretrained(UpperCamelCase_)
   __lowercase								=						BioGptForCausalLM(UpperCamelCase_)

   # check that it loads ok
   model_new.load_state_dict(UpperCamelCase_)

   # save
   __lowercase								=						os.path.join(UpperCamelCase_,			UpperCamelCase_)
   print(F"""Generating {pytorch_weights_dump_path}""")
   torch.save(UpperCamelCase_,			UpperCamelCase_)

   print("Conversion is done!")


if __name__ == "__main__":
   _a       =							argparse.ArgumentParser()
   # Required parameters
   parser.add_argument(
       '--biogpt_checkpoint_path',
       default=None,
       type=str,
       required=True,
       help=(
           'Path to the official PyTorch checkpoint file which is expected to reside in the dump dir with dicts,'
           ' bpecodes, etc.'
       ),
   )
   parser.add_argument(
       '--pytorch_dump_folder_path', default=None, type=str, required=True, help='Path to the output PyTorch model.'
   )
   _a       =							parser.parse_args()
   convert_biogpt_checkpoint_to_pytorch(args.biogpt_checkpoint_path, args.pytorch_dump_folder_path)




